J4_6MTC_003

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6MTC|1|5|C|216, 6MTC|1|5|C|217, 6MTC|1|5|A|218, 6MTC|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTC|1|5|C|196
6MTC|1|5|A|197
6MTC|1|5|A|198
6MTC|1|5|G|199
*
6MTC|1|5|C|215
6MTC|1|5|C|216
6MTC|1|5|C|217
6MTC|1|5|A|218
6MTC|1|5|G|219
6MTC|1|5|C|220
6MTC|1|5|C|221
6MTC|1|5|C|222
*
6MTC|1|5|G|226
6MTC|1|5|A|227
6MTC|1|5|C|228
*
6MTC|1|5|G|240
6MTC|1|5|G|241
6MTC|1|5|U|242
6MTC|1|5|A|243
6MTC|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26