J4_6MTC_004
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CC*GAGGGAG*UGCCGCCG*CACGGGG
- Length
- 24 nucleotides
- Bulged bases
- 6MTC|1|5|G|959, 6MTC|1|5|C|972, 6MTC|1|5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTC|1|5|C|712
6MTC|1|5|C|713
*
6MTC|1|5|G|955
6MTC|1|5|A|956
6MTC|1|5|G|957
6MTC|1|5|G|958
6MTC|1|5|G|959
6MTC|1|5|A|960
6MTC|1|5|G|961
*
6MTC|1|5|U|971
6MTC|1|5|G|971|||A
6MTC|1|5|C|972
6MTC|1|5|C|973
6MTC|1|5|G|974
6MTC|1|5|C|975
6MTC|1|5|C|976
6MTC|1|5|G|977
*
6MTC|1|5|C|1278
6MTC|1|5|A|1279
6MTC|1|5|C|1280
6MTC|1|5|G|1281
6MTC|1|5|G|1282
6MTC|1|5|G|1283
6MTC|1|5|G|1284
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- 60S ribosomal protein L7
- Chain e
- 60S ribosomal protein L32
Coloring options: