J4_6MTC_009
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6MTC|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6MTC_009 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1171
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTC|1|5|C|3696
6MTC|1|5|U|3697
6MTC|1|5|G|3698
*
6MTC|1|5|C|3752
6MTC|1|5|G|3753
*
6MTC|1|5|C|3771
6MTC|1|5|U|3772
6MTC|1|5|U|3773
6MTC|1|5|A|3774
6MTC|1|5|A|3775
6MTC|1|5|G|3776
6MTC|1|5|G|3777
6MTC|1|5|U|3778
6MTC|1|5|A|3779
6MTC|1|5|G|3780
*
6MTC|1|5|U|3814
6MTC|1|5|G|3815
6MTC|1|5|A|3816
6MTC|1|5|A|3817
6MTC|1|5|U|3818
6MTC|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 60S ribosomal protein L8
- Chain n
- 60S ribosomal protein L41
- Chain v
- Interferon-related developmental regulator 2
Coloring options: