J4_6MTD_003

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGGGAG*UGCCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

6MTD|1|5|G|959, 6MTD|1|5|C|972, 6MTD|1|5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|712
6MTD|1|5|C|713
*
6MTD|1|5|G|955
6MTD|1|5|A|956
6MTD|1|5|G|957
6MTD|1|5|G|958
6MTD|1|5|G|959
6MTD|1|5|A|960
6MTD|1|5|G|961
*
6MTD|1|5|U|971
6MTD|1|5|G|971|||A
6MTD|1|5|C|972
6MTD|1|5|C|973
6MTD|1|5|G|974
6MTD|1|5|C|975
6MTD|1|5|C|976
6MTD|1|5|G|977
*
6MTD|1|5|C|1278
6MTD|1|5|A|1279
6MTD|1|5|C|1280
6MTD|1|5|G|1281
6MTD|1|5|G|1282
6MTD|1|5|G|1283
6MTD|1|5|G|1284

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain E

eL6

Chain F

uL30

Chain e

eL32