J4_6MTD_006

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6MTD|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|G|2618
6MTD|1|5|G|2619
*
6MTD|1|5|U|2637
6MTD|1|5|G|2638
6MTD|1|5|U|2639
6MTD|1|5|G|2640
6MTD|1|5|A|2641
6MTD|1|5|A|2642
*
6MTD|1|5|U|2692
6MTD|1|5|G|2693
6MTD|1|5|G|2694
6MTD|1|5|A|2695
6MTD|1|5|A|2696
6MTD|1|5|A|2697
6MTD|1|5|G|2698
*
6MTD|1|5|U|2718
6MTD|1|5|C|2719

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain U

eL22

Chain g

eL34

Chain k

eL38