J4_6MTE_007
3D structure
- PDB id
- 6MTE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6MTE|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6MTE_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1257
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6MTE|1|5|C|3696
6MTE|1|5|U|3697
6MTE|1|5|G|3698
*
6MTE|1|5|C|3752
6MTE|1|5|G|3753
*
6MTE|1|5|C|3771
6MTE|1|5|U|3772
6MTE|1|5|U|3773
6MTE|1|5|A|3774
6MTE|1|5|A|3775
6MTE|1|5|G|3776
6MTE|1|5|G|3777
6MTE|1|5|U|3778
6MTE|1|5|A|3779
6MTE|1|5|G|3780
*
6MTE|1|5|U|3814
6MTE|1|5|G|3815
6MTE|1|5|A|3816
6MTE|1|5|A|3817
6MTE|1|5|U|3818
6MTE|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain n
- eL41
Coloring options: