J4_6N8L_006

3D structure

PDB id

6N8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACUG*CAUAGC*GUGAUUU*GAUUAAC

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8L|1|1|G|2130
6N8L|1|1|A|2131
6N8L|1|1|C|2132
6N8L|1|1|U|2133
6N8L|1|1|G|2134
*
6N8L|1|1|C|2146
6N8L|1|1|A|2147
6N8L|1|1|U|2148
6N8L|1|1|A|2149
6N8L|1|1|G|2150
6N8L|1|1|C|2151
*
6N8L|1|1|G|2185
6N8L|1|1|U|2186
6N8L|1|1|G|2187
6N8L|1|1|A|2188
6N8L|1|1|U|2189
6N8L|1|1|U|2190
6N8L|1|1|U|2191
*
6N8L|1|1|G|2316
6N8L|1|1|A|2317
6N8L|1|1|U|2318
6N8L|1|1|U|2319
6N8L|1|1|A|2320
6N8L|1|1|A|2321
6N8L|1|1|C|2322

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A