J4_6N8N_004
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCAAAAUAG*UG*UGGUACGGACAAGG*CAC
- Length
- 28 nucleotides
- Bulged bases
- 6N8N|1|A|G|2111, 6N8N|1|A|G|2116, 6N8N|1|A|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8N|1|A|G|1906
6N8N|1|A|C|1907
6N8N|1|A|A|1908
6N8N|1|A|A|1909
6N8N|1|A|A|1910
6N8N|1|A|A|1911
6N8N|1|A|U|1912
6N8N|1|A|A|1913
6N8N|1|A|G|1914
*
6N8N|1|A|U|1938
6N8N|1|A|G|1939
*
6N8N|1|A|U|2109
6N8N|1|A|G|2110
6N8N|1|A|G|2111
6N8N|1|A|U|2112
6N8N|1|A|A|2113
6N8N|1|A|C|2114
6N8N|1|A|G|2115
6N8N|1|A|G|2116
6N8N|1|A|A|2117
6N8N|1|A|C|2118
6N8N|1|A|A|2119
6N8N|1|A|A|2120
6N8N|1|A|G|2121
6N8N|1|A|G|2122
*
6N8N|1|A|C|2331
6N8N|1|A|A|2332
6N8N|1|A|C|2333
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain W
- Large subunit GTPase 1
- Chain e
- 60S ribosomal protein L19-A
- Chain i
- 60S ribosomal protein L23-A
- Chain j
- 60S ribosomal protein L24-A
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