J4_6N8N_006

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUG

Length

39 nucleotides

Bulged bases

6N8N|1|A|U|2269, 6N8N|1|A|A|2281, 6N8N|1|A|C|2287, 6N8N|1|A|C|2306, 6N8N|1|A|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|C|2192
6N8N|1|A|U|2193
6N8N|1|A|G|2194
*
6N8N|1|A|C|2248
6N8N|1|A|G|2249
*
6N8N|1|A|C|2267
6N8N|1|A|U|2268
6N8N|1|A|U|2269
6N8N|1|A|A|2270
6N8N|1|A|A|2271
6N8N|1|A|G|2272
6N8N|1|A|G|2273
6N8N|1|A|U|2274
6N8N|1|A|A|2275
6N8N|1|A|G|2276
6N8N|1|A|C|2277
6N8N|1|A|C|2278
6N8N|1|A|A|2279
6N8N|1|A|A|2280
6N8N|1|A|A|2281
6N8N|1|A|U|2282
6N8N|1|A|G|2283
6N8N|1|A|C|2284
6N8N|1|A|C|2285
6N8N|1|A|U|2286
6N8N|1|A|C|2287
6N8N|1|A|G|2288
*
6N8N|1|A|C|2304
6N8N|1|A|G|2305
6N8N|1|A|C|2306
6N8N|1|A|G|2307
6N8N|1|A|C|2308
6N8N|1|A|A|2309
6N8N|1|A|U|2310
6N8N|1|A|G|2311
6N8N|1|A|A|2312
6N8N|1|A|A|2313
6N8N|1|A|U|2314
6N8N|1|A|G|2315

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain V

60S ribosomal export protein NMD3

Chain W

Large subunit GTPase 1