J4_6N8N_011

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUG*CAUAGC*GUGAUU*AUUAAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|G|2130
6N8N|1|A|A|2131
6N8N|1|A|C|2132
6N8N|1|A|U|2133
6N8N|1|A|G|2134
*
6N8N|1|A|C|2146
6N8N|1|A|A|2147
6N8N|1|A|U|2148
6N8N|1|A|A|2149
6N8N|1|A|G|2150
6N8N|1|A|C|2151
*
6N8N|1|A|G|2185
6N8N|1|A|U|2186
6N8N|1|A|G|2187
6N8N|1|A|A|2188
6N8N|1|A|U|2189
6N8N|1|A|U|2190
*
6N8N|1|A|A|2317
6N8N|1|A|U|2318
6N8N|1|A|U|2319
6N8N|1|A|A|2320
6N8N|1|A|A|2321
6N8N|1|A|C|2322

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L43-A