J4_6N9E_011

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAGUAACG*UC*GUAGCC*GGCC

Length

20 nucleotides

Bulged bases

6N9E|1|1a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9E|1|1a|G|115
6N9E|1|1a|A|116
6N9E|1|1a|G|117
6N9E|1|1a|U|118
6N9E|1|1a|A|119
6N9E|1|1a|A|120
6N9E|1|1a|C|121
6N9E|1|1a|G|122
*
6N9E|1|1a|U|239
6N9E|1|1a|C|240
*
6N9E|1|1a|G|286
6N9E|1|1a|U|287
6N9E|1|1a|A|288
6N9E|1|1a|G|289
6N9E|1|1a|C|290
6N9E|1|1a|C|291
*
6N9E|1|1a|G|309
6N9E|1|1a|G|310
6N9E|1|1a|C|311
6N9E|1|1a|C|312

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16

Chain 1q

30S ribosomal protein S17