J4_6N9E_029

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6N9E|1|2A|G|1271, 6N9E|1|2A|A|1272, 6N9E|1|2A|U|1273, 6N9E|1|2A|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N9E_029 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.1112

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6N9E|1|2A|C|1270
6N9E|1|2A|G|1271
6N9E|1|2A|A|1272
6N9E|1|2A|U|1273
6N9E|1|2A|A|1274
6N9E|1|2A|A|1275
6N9E|1|2A|A|1276
*
6N9E|1|2A|U|1294
6N9E|1|2A|C|1295
*
6N9E|1|2A|G|1645
6N9E|1|2A|C|1646
6N9E|1|2A|G|1647
6N9E|1|2A|C|1648
*
6N9E|1|2A|G|2009
6N9E|1|2A|G|2010

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2R

50S Ribosomal Protein L17

Chain 2W

50S Ribosomal Protein L22