J4_6N9F_002

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N9F_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0994

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6N9F|1|1A|C|321
6N9F|1|1A|G|322
6N9F|1|1A|A|323
6N9F|1|1A|A|324
6N9F|1|1A|G|325
*
6N9F|1|1A|C|340
6N9F|1|1A|G|341
6N9F|1|1A|C|342
6N9F|1|1A|C|343
*
6N9F|1|1A|G|347
6N9F|1|1A|A|348
6N9F|1|1A|G|349
*
6N9F|1|1A|C|361
6N9F|1|1A|G|362
6N9F|1|1A|U|363
6N9F|1|1A|A|364
6N9F|1|1A|G|365

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S Ribosomal Protein L4

Chain 1Y

50S ribosomal protein L24