J4_6N9F_011
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAGUAACG*UC*GUAGC*GCC
- Length
- 18 nucleotides
- Bulged bases
- 6N9F|1|1a|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6N9F_011 not in the Motif Atlas
- Homologous match to J4_6CZR_011
- Geometric discrepancy: 0.0957
- The information below is about J4_6CZR_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N9F|1|1a|G|115
6N9F|1|1a|A|116
6N9F|1|1a|G|117
6N9F|1|1a|U|118
6N9F|1|1a|A|119
6N9F|1|1a|A|120
6N9F|1|1a|C|121
6N9F|1|1a|G|122
*
6N9F|1|1a|U|239
6N9F|1|1a|C|240
*
6N9F|1|1a|G|286
6N9F|1|1a|U|287
6N9F|1|1a|A|288
6N9F|1|1a|G|289
6N9F|1|1a|C|290
*
6N9F|1|1a|G|310
6N9F|1|1a|C|311
6N9F|1|1a|C|312
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
- Chain 1q
- 30S ribosomal protein S17
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