J4_6N9F_017

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUAAAG*CUC*GCGC*GG

Length

17 nucleotides

Bulged bases

6N9F|1|2A|G|1271, 6N9F|1|2A|A|1272, 6N9F|1|2A|U|1273, 6N9F|1|2A|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9F|1|2A|C|1270
6N9F|1|2A|G|1271
6N9F|1|2A|A|1272
6N9F|1|2A|U|1273
6N9F|1|2A|A|1274
6N9F|1|2A|A|1275
6N9F|1|2A|A|1276
6N9F|1|2A|G|1277
*
6N9F|1|2A|C|1293
6N9F|1|2A|U|1294
6N9F|1|2A|C|1295
*
6N9F|1|2A|G|1645
6N9F|1|2A|C|1646
6N9F|1|2A|G|1647
6N9F|1|2A|C|1648
*
6N9F|1|2A|G|2009
6N9F|1|2A|G|2010

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2R

50S Ribosomal Protein L17

Chain 2W

50S Ribosomal Protein L22