3D structure

PDB id
6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGAAG*CGCC*GAG*CGUAG
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ND5_002 not in the Motif Atlas
Homologous match to J4_9DFE_002
Geometric discrepancy: 0.0516
The information below is about J4_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6ND5|1|1A|C|297
6ND5|1|1A|G|298
6ND5|1|1A|A|299
6ND5|1|1A|A|300
6ND5|1|1A|G|301
*
6ND5|1|1A|C|316
6ND5|1|1A|G|317
6ND5|1|1A|C|318
6ND5|1|1A|C|319
*
6ND5|1|1A|G|323
6ND5|1|1A|A|324
6ND5|1|1A|G|325
*
6ND5|1|1A|C|337
6ND5|1|1A|G|338
6ND5|1|1A|U|339
6ND5|1|1A|A|340
6ND5|1|1A|G|341

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1F
50S ribosomal protein L4
Chain 1Y
50S ribosomal protein L24

Coloring options:


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