J4_6ND5_012

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGG*CCAUGUG*CAAAG*CGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND5|1|1a|G|142
6ND5|1|1a|A|143
6ND5|1|1a|G|144
6ND5|1|1a|G|145
*
6ND5|1|1a|C|177
6ND5|1|1a|C|178
6ND5|1|1a|A|179
6ND5|1|1a|U|180
6ND5|1|1a|G|181
6ND5|1|1a|U|182
6ND5|1|1a|G|183
*
6ND5|1|1a|C|194
6ND5|1|1a|A|195
6ND5|1|1a|A|196
6ND5|1|1a|A|197
6ND5|1|1a|G|198
*
6ND5|1|1a|C|219
6ND5|1|1a|G|220
6ND5|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20