J4_6ND5_030
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GA(4SU)AG*CAGG*CCGU(7MG)UCCUU*GAGUC
- Length
- 24 nucleotides
- Bulged bases
- 6ND5|1|2w|4SU|8, 6ND5|1|2w|U|47, 6ND5|1|2w|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ND5|1|2w|G|6
6ND5|1|2w|A|7
6ND5|1|2w|4SU|8
6ND5|1|2w|A|9
6ND5|1|2w|G|10
*
6ND5|1|2w|C|25
6ND5|1|2w|A|26
6ND5|1|2w|G|27
6ND5|1|2w|G|28
*
6ND5|1|2w|C|42
6ND5|1|2w|C|43
6ND5|1|2w|G|44
6ND5|1|2w|U|45
6ND5|1|2w|7MG|46
6ND5|1|2w|U|47
6ND5|1|2w|C|48
6ND5|1|2w|C|49
6ND5|1|2w|U|50
6ND5|1|2w|U|51
*
6ND5|1|2w|G|63
6ND5|1|2w|A|64
6ND5|1|2w|G|65
6ND5|1|2w|U|66
6ND5|1|2w|C|67
Current chains
- Chain 2w
- A-site and E-site tRNAs
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: