J4_6NDK_007

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6NDK|1|RA|G|1271, 6NDK|1|RA|A|1272, 6NDK|1|RA|U|1273, 6NDK|1|RA|A|1274, 6NDK|1|RA|C|1646, 6NDK|1|RA|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NDK_007 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.1438

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6NDK|1|RA|C|1270
6NDK|1|RA|G|1271
6NDK|1|RA|A|1272
6NDK|1|RA|U|1273
6NDK|1|RA|A|1274
6NDK|1|RA|A|1275
6NDK|1|RA|A|1276
*
6NDK|1|RA|U|1294
6NDK|1|RA|C|1295
*
6NDK|1|RA|G|1645
6NDK|1|RA|C|1646
6NDK|1|RA|G|1647
6NDK|1|RA|C|1648
*
6NDK|1|RA|G|2009
6NDK|1|RA|G|2010

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RR

50S ribosomal protein L17

Chain RW

50S ribosomal protein L22