3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
GUGG*CGUC*GAAGGUCG*CC
Length
18 nucleotides
Bulged bases
6NDK|1|XV|U|8, 6NDK|1|XV|U|47, 6NDK|1|XV|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6NDK_018 not in the Motif Atlas
Homologous match to J4_7E8O_001
Geometric discrepancy: 0.2899
The information below is about J4_7E8O_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6NDK|1|XV|G|7
6NDK|1|XV|U|8
6NDK|1|XV|G|9
6NDK|1|XV|G|10
*
6NDK|1|XV|C|25
6NDK|1|XV|G|26
6NDK|1|XV|U|27
6NDK|1|XV|C|28
*
6NDK|1|XV|G|42
6NDK|1|XV|A|43
6NDK|1|XV|A|44
6NDK|1|XV|G|45
6NDK|1|XV|G|46
6NDK|1|XV|U|47
6NDK|1|XV|C|48
6NDK|1|XV|G|49
*
6NDK|1|XV|C|65
6NDK|1|XV|C|66

Current chains

Chain XV
P-site tRNAfMet

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XM
30S ribosomal protein S13
Chain YA
Large subunit ribosomal RNA; LSU rRNA
Chain YQ
50S ribosomal protein L16

Coloring options:


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