J4_6NDK_022

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGGUUC*GGUUAG*CU*ACCCGUACC

Length

23 nucleotides

Bulged bases

6NDK|1|YA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|YA|G|1309
6NDK|1|YA|G|1310
6NDK|1|YA|G|1311
6NDK|1|YA|U|1312
6NDK|1|YA|U|1313
6NDK|1|YA|C|1314
*
6NDK|1|YA|G|1338
6NDK|1|YA|G|1339
6NDK|1|YA|U|1340
6NDK|1|YA|U|1341
6NDK|1|YA|A|1342
6NDK|1|YA|G|1343
*
6NDK|1|YA|C|1404
6NDK|1|YA|U|1405
*
6NDK|1|YA|A|1597
6NDK|1|YA|C|1598
6NDK|1|YA|C|1599
6NDK|1|YA|C|1600
6NDK|1|YA|G|1601
6NDK|1|YA|U|1602
6NDK|1|YA|A|1603
6NDK|1|YA|C|1604
6NDK|1|YA|C|1605

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YX

50S ribosomal protein L23