J4_6NDK_025
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAGCGAAA(5MU)UC(5MC)UUG*C(5MC)UGCACGAAAA
- Length
- 39 nucleotides
- Bulged bases
- 6NDK|1|YA|A|1938, 6NDK|1|YA|U|1944, 6NDK|1|YA|U|1963, 6NDK|1|YA|A|1971
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6NDK|1|YA|U|1833
6NDK|1|YA|U|1834
6NDK|1|YA|G|1835
*
6NDK|1|YA|C|1905
6NDK|1|YA|G|1906
*
6NDK|1|YA|C|1924
6NDK|1|YA|C|1925
6NDK|1|YA|U|1926
6NDK|1|YA|A|1927
6NDK|1|YA|A|1928
6NDK|1|YA|G|1929
6NDK|1|YA|G|1930
6NDK|1|YA|U|1931
6NDK|1|YA|A|1932
6NDK|1|YA|G|1933
6NDK|1|YA|C|1934
6NDK|1|YA|G|1935
6NDK|1|YA|A|1936
6NDK|1|YA|A|1937
6NDK|1|YA|A|1938
6NDK|1|YA|5MU|1939
6NDK|1|YA|U|1940
6NDK|1|YA|C|1941
6NDK|1|YA|5MC|1942
6NDK|1|YA|U|1943
6NDK|1|YA|U|1944
6NDK|1|YA|G|1945
*
6NDK|1|YA|C|1961
6NDK|1|YA|5MC|1962
6NDK|1|YA|U|1963
6NDK|1|YA|G|1964
6NDK|1|YA|C|1965
6NDK|1|YA|A|1966
6NDK|1|YA|C|1967
6NDK|1|YA|G|1968
6NDK|1|YA|A|1969
6NDK|1|YA|A|1970
6NDK|1|YA|A|1971
6NDK|1|YA|A|1972
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XV
- Transfer RNA; tRNA
- Chain YD
- 50S ribosomal protein L2
Coloring options: