J4_6NWY_004

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGG*CAC*GGGGUCG*UA

Length

16 nucleotides

Bulged bases

6NWY|1|QV|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

6NWY|1|QV|U|7
6NWY|1|QV|U|8
6NWY|1|QV|G|9
6NWY|1|QV|G|10
*
6NWY|1|QV|C|25
6NWY|1|QV|A|26
6NWY|1|QV|C|27
*
6NWY|1|QV|G|43
6NWY|1|QV|G|44
6NWY|1|QV|G|45
6NWY|1|QV|G|46
6NWY|1|QV|U|47
6NWY|1|QV|C|48
6NWY|1|QV|G|49
*
6NWY|1|QV|U|65
6NWY|1|QV|A|66

Current chains

Chain QV

E-site tRNA-Pro

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QM

30S ribosomal protein S13

Chain R6

50S ribosomal protein L33