J4_6NWY_012

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6NWY|1|RA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NWY_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1898

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6NWY|1|RA|U|1833
6NWY|1|RA|U|1834
6NWY|1|RA|G|1835
*
6NWY|1|RA|C|1905
6NWY|1|RA|G|1906
*
6NWY|1|RA|C|1924
6NWY|1|RA|C|1925
6NWY|1|RA|U|1926
6NWY|1|RA|A|1927
6NWY|1|RA|A|1928
6NWY|1|RA|G|1929
6NWY|1|RA|G|1930
6NWY|1|RA|U|1931
6NWY|1|RA|A|1932
6NWY|1|RA|G|1933
*
6NWY|1|RA|C|1967
6NWY|1|RA|G|1968
6NWY|1|RA|A|1969
6NWY|1|RA|A|1970
6NWY|1|RA|A|1971
6NWY|1|RA|A|1972

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2