J4_6NWY_024

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6NWY|1|YA|A|1444|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NWY_024 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.18

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6NWY|1|YA|G|1444|||A
6NWY|1|YA|A|1444|||B
6NWY|1|YA|C|1445
*
6NWY|1|YA|G|1466
6NWY|1|YA|C|1467
*
6NWY|1|YA|G|1525
6NWY|1|YA|G|1526
*
6NWY|1|YA|C|1546
6NWY|1|YA|C|1547

Current chains

Chain YA

23S rRNA

Nearby chains