J4_6NWY_031

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAACG*UC*GUAGC*GCC

Length

18 nucleotides

Bulged bases

6NWY|1|XA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NWY_031 not in the Motif Atlas

Homologous match to J4_6CZR_011

Geometric discrepancy: 0.1347

The information below is about J4_6CZR_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NWY|1|XA|G|115
6NWY|1|XA|A|116
6NWY|1|XA|G|117
6NWY|1|XA|U|118
6NWY|1|XA|A|119
6NWY|1|XA|A|120
6NWY|1|XA|C|121
6NWY|1|XA|G|122
*
6NWY|1|XA|U|239
6NWY|1|XA|C|240
*
6NWY|1|XA|G|286
6NWY|1|XA|U|287
6NWY|1|XA|A|288
6NWY|1|XA|G|289
6NWY|1|XA|C|290
*
6NWY|1|XA|G|310
6NWY|1|XA|C|311
6NWY|1|XA|C|312

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17