J4_6NWY_032
3D structure
- PDB id
- 6NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGG*CAC*GGGGUCG*UA
- Length
- 16 nucleotides
- Bulged bases
- 6NWY|1|XV|U|8, 6NWY|1|XV|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6NWY_032 not in the Motif Atlas
- Homologous match to J4_4V9K_004
- Geometric discrepancy: 0.2666
- The information below is about J4_4V9K_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6NWY|1|XV|U|7
6NWY|1|XV|U|8
6NWY|1|XV|G|9
6NWY|1|XV|G|10
*
6NWY|1|XV|C|25
6NWY|1|XV|A|26
6NWY|1|XV|C|27
*
6NWY|1|XV|G|43
6NWY|1|XV|G|44
6NWY|1|XV|G|45
6NWY|1|XV|G|46
6NWY|1|XV|U|47
6NWY|1|XV|C|48
6NWY|1|XV|G|49
*
6NWY|1|XV|U|65
6NWY|1|XV|A|66
Current chains
- Chain XV
- E-site tRNA-Pro
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain Y6
- 50S ribosomal protein L33
Coloring options: