3D structure

PDB id
6NY6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
UGAGUAACG*UC*GUAG*CCA
Length
18 nucleotides
Bulged bases
6NY6|1|A|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6NY6|1|A|U|114
6NY6|1|A|G|115
6NY6|1|A|A|116
6NY6|1|A|G|117
6NY6|1|A|U|118
6NY6|1|A|A|119
6NY6|1|A|A|120
6NY6|1|A|C|121
6NY6|1|A|G|122
*
6NY6|1|A|U|239
6NY6|1|A|C|240
*
6NY6|1|A|G|286
6NY6|1|A|U|287
6NY6|1|A|A|288
6NY6|1|A|G|289
*
6NY6|1|A|C|311
6NY6|1|A|C|312
6NY6|1|A|A|313

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain P
30S ribosomal protein S16
Chain Q
30S ribosomal protein S17

Coloring options:

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