3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
6O3M|1|RA|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6O3M_012 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1122
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6O3M|1|RA|U|1833
6O3M|1|RA|U|1834
6O3M|1|RA|G|1835
*
6O3M|1|RA|C|1905
6O3M|1|RA|G|1906
*
6O3M|1|RA|C|1924
6O3M|1|RA|C|1925
6O3M|1|RA|U|1926
6O3M|1|RA|A|1927
6O3M|1|RA|A|1928
6O3M|1|RA|G|1929
6O3M|1|RA|G|1930
6O3M|1|RA|U|1931
6O3M|1|RA|A|1932
6O3M|1|RA|G|1933
*
6O3M|1|RA|C|1967
6O3M|1|RA|G|1968
6O3M|1|RA|A|1969
6O3M|1|RA|A|1970
6O3M|1|RA|A|1971
6O3M|1|RA|A|1972

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain QV
Transfer RNA; tRNA
Chain RD
50S ribosomal protein L2

Coloring options:


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