J4_6O8X_009

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

6O8X|1|A|A|1985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8X_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1843

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6O8X|1|A|C|1847
6O8X|1|A|U|1848
6O8X|1|A|G|1849
*
6O8X|1|A|C|1919
6O8X|1|A|G|1920
*
6O8X|1|A|C|1938
6O8X|1|A|C|1939
6O8X|1|A|U|1940
6O8X|1|A|A|1941
6O8X|1|A|A|1942
6O8X|1|A|G|1943
6O8X|1|A|G|1944
6O8X|1|A|U|1945
6O8X|1|A|A|1946
6O8X|1|A|G|1947
*
6O8X|1|A|C|1981
6O8X|1|A|G|1982
6O8X|1|A|A|1983
6O8X|1|A|A|1984
6O8X|1|A|A|1985
6O8X|1|A|G|1986

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA