J4_6O8Z_002

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGAAG*CGCU*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8Z_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1439

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6O8Z|1|A|U|334
6O8Z|1|A|G|335
6O8Z|1|A|A|336
6O8Z|1|A|A|337
6O8Z|1|A|G|338
*
6O8Z|1|A|C|353
6O8Z|1|A|G|354
6O8Z|1|A|C|355
6O8Z|1|A|U|356
*
6O8Z|1|A|G|360
6O8Z|1|A|A|361
6O8Z|1|A|G|362
*
6O8Z|1|A|C|374
6O8Z|1|A|G|375
6O8Z|1|A|U|376
6O8Z|1|A|A|377
6O8Z|1|A|G|378

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24