J4_6O8Z_004

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

6O8Z|1|A|G|1308, 6O8Z|1|A|A|1309, 6O8Z|1|A|A|1311, 6O8Z|1|A|G|1690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O8Z_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.1745

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6O8Z|1|A|C|1307
6O8Z|1|A|G|1308
6O8Z|1|A|A|1309
6O8Z|1|A|A|1310
6O8Z|1|A|A|1311
6O8Z|1|A|G|1312
*
6O8Z|1|A|C|1330
6O8Z|1|A|C|1331
*
6O8Z|1|A|G|1688
6O8Z|1|A|A|1689
6O8Z|1|A|G|1690
6O8Z|1|A|C|1691
*
6O8Z|1|A|G|2023
6O8Z|1|A|G|2024

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22