J4_6O8Z_012

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAG*CAUAACAGU*GAGUGAAAG*CGC

Length

24 nucleotides

Bulged bases

6O8Z|1|a|C|189, 6O8Z|1|a|A|218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O8Z|1|a|G|148
6O8Z|1|a|A|149
6O8Z|1|a|G|150
*
6O8Z|1|a|C|184
6O8Z|1|a|A|185
6O8Z|1|a|U|186
6O8Z|1|a|A|187
6O8Z|1|a|A|188
6O8Z|1|a|C|189
6O8Z|1|a|A|190
6O8Z|1|a|G|191
6O8Z|1|a|U|192
*
6O8Z|1|a|G|211
6O8Z|1|a|A|212
6O8Z|1|a|G|213
6O8Z|1|a|U|214
6O8Z|1|a|G|215
6O8Z|1|a|A|216
6O8Z|1|a|A|217
6O8Z|1|a|A|218
6O8Z|1|a|G|219
*
6O8Z|1|a|C|234
6O8Z|1|a|G|235
6O8Z|1|a|C|236

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20