J4_6O8Z_013
3D structure
- PDB id
- 6O8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6O8Z|1|a|C|591, 6O8Z|1|a|A|830
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6O8Z_013 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1089
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6O8Z|1|a|G|590
6O8Z|1|a|C|591
6O8Z|1|a|G|592
*
6O8Z|1|a|C|779
6O8Z|1|a|G|780
6O8Z|1|a|A|781
6O8Z|1|a|A|782
6O8Z|1|a|A|783
6O8Z|1|a|G|784
*
6O8Z|1|a|C|825
6O8Z|1|a|C|826
6O8Z|1|a|G|827
6O8Z|1|a|U|828
6O8Z|1|a|A|829
6O8Z|1|a|A|830
6O8Z|1|a|A|831
6O8Z|1|a|C|832
6O8Z|1|a|G|833
6O8Z|1|a|A|834
6O8Z|1|a|U|835
6O8Z|1|a|G|836
*
6O8Z|1|a|C|895
6O8Z|1|a|C|896
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
Coloring options: