J4_6O97_004

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6O97|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O97_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0563

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6O97|1|1A|G|1310
6O97|1|1A|G|1311
6O97|1|1A|U|1312
6O97|1|1A|U|1313
6O97|1|1A|C|1314
*
6O97|1|1A|G|1338
6O97|1|1A|G|1339
6O97|1|1A|U|1340
6O97|1|1A|U|1341
6O97|1|1A|A|1342
6O97|1|1A|G|1343
*
6O97|1|1A|C|1404
6O97|1|1A|U|1405
*
6O97|1|1A|A|1597
6O97|1|1A|C|1598
6O97|1|1A|C|1599
6O97|1|1A|C|1600
6O97|1|1A|G|1601
6O97|1|1A|U|1602
6O97|1|1A|A|1603
6O97|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23