J4_6O97_018

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O97_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0899

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6O97|1|2A|C|297
6O97|1|2A|G|298
6O97|1|2A|A|299
6O97|1|2A|A|300
6O97|1|2A|G|301
*
6O97|1|2A|C|316
6O97|1|2A|G|317
6O97|1|2A|C|318
6O97|1|2A|C|319
*
6O97|1|2A|G|323
6O97|1|2A|A|324
6O97|1|2A|G|325
*
6O97|1|2A|C|337
6O97|1|2A|G|338
6O97|1|2A|U|339
6O97|1|2A|A|340
6O97|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24