3D structure

PDB id
6O97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.75 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
6O97|1|2A|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6O97_024 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0697
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6O97|1|2A|U|1833
6O97|1|2A|U|1834
6O97|1|2A|G|1835
*
6O97|1|2A|C|1905
6O97|1|2A|G|1906
*
6O97|1|2A|C|1924
6O97|1|2A|C|1925
6O97|1|2A|U|1926
6O97|1|2A|A|1927
6O97|1|2A|A|1928
6O97|1|2A|G|1929
6O97|1|2A|G|1930
6O97|1|2A|U|1931
6O97|1|2A|A|1932
6O97|1|2A|G|1933
*
6O97|1|2A|C|1967
6O97|1|2A|G|1968
6O97|1|2A|A|1969
6O97|1|2A|A|1970
6O97|1|2A|A|1971
6O97|1|2A|A|1972

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA
Chain 2x
Transfer RNA; tRNA

Coloring options:


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