J4_6O9J_002

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6O9J_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1223

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6O9J|1|B|G|297
6O9J|1|B|G|298
6O9J|1|B|A|299
6O9J|1|B|A|300
6O9J|1|B|G|301
*
6O9J|1|B|C|316
6O9J|1|B|G|317
6O9J|1|B|C|318
6O9J|1|B|G|319
*
6O9J|1|B|C|323
6O9J|1|B|A|324
6O9J|1|B|G|325
*
6O9J|1|B|C|337
6O9J|1|B|G|338
6O9J|1|B|U|339
6O9J|1|B|A|340
6O9J|1|B|C|341

Current chains

Chain B

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24