3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
6OGF|1|1|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OGF_008 not in the Motif Atlas
Homologous match to J4_5J7L_026
Geometric discrepancy: 0.129
The information below is about J4_5J7L_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6OGF|1|1|C|1833
6OGF|1|1|U|1834
6OGF|1|1|G|1835
*
6OGF|1|1|C|1905
6OGF|1|1|G|1906
*
6OGF|1|1|C|1924
6OGF|1|1|C|1925
6OGF|1|1|U|1926
6OGF|1|1|A|1927
6OGF|1|1|A|1928
6OGF|1|1|G|1929
6OGF|1|1|G|1930
6OGF|1|1|U|1931
6OGF|1|1|A|1932
6OGF|1|1|G|1933
*
6OGF|1|1|C|1967
6OGF|1|1|G|1968
6OGF|1|1|A|1969
6OGF|1|1|A|1970
6OGF|1|1|U|1971
6OGF|1|1|G|1972

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain 5
Transfer RNA; tRNA
Chain b
50S ribosomal protein L2

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