3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
6OJ2|1|YA|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OJ2_027 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1613
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6OJ2|1|YA|U|1833
6OJ2|1|YA|U|1834
6OJ2|1|YA|G|1835
*
6OJ2|1|YA|C|1905
6OJ2|1|YA|G|1906
*
6OJ2|1|YA|C|1924
6OJ2|1|YA|C|1925
6OJ2|1|YA|U|1926
6OJ2|1|YA|A|1927
6OJ2|1|YA|A|1928
6OJ2|1|YA|G|1929
6OJ2|1|YA|G|1930
6OJ2|1|YA|U|1931
6OJ2|1|YA|A|1932
6OJ2|1|YA|G|1933
*
6OJ2|1|YA|C|1967
6OJ2|1|YA|G|1968
6OJ2|1|YA|A|1969
6OJ2|1|YA|A|1970
6OJ2|1|YA|A|1971
6OJ2|1|YA|A|1972

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XV
Transfer RNA; tRNA
Chain YD
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1414 s