J4_6OLG_001

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUCUC*GCCGGG*CCACGCGCGC*GGCGGAGCGAGC

Length

34 nucleotides

Bulged bases

6OLG|1|A2|U|967, 6OLG|1|A2|C|1055, 6OLG|1|A2|C|1220, 6OLG|1|A2|G|1223, 6OLG|1|A2|C|1224, 6OLG|1|A2|G|1225, 6OLG|1|A2|G|1254, 6OLG|1|A2|C|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|A2|G|965
6OLG|1|A2|C|966
6OLG|1|A2|U|967
6OLG|1|A2|C|968
6OLG|1|A2|U|969
6OLG|1|A2|C|970
*
6OLG|1|A2|G|1053
6OLG|1|A2|C|1054
6OLG|1|A2|C|1055
6OLG|1|A2|G|1056
6OLG|1|A2|G|1057
6OLG|1|A2|G|1058
*
6OLG|1|A2|C|1219
6OLG|1|A2|C|1220
6OLG|1|A2|A|1221
6OLG|1|A2|C|1222
6OLG|1|A2|G|1223
6OLG|1|A2|C|1224
6OLG|1|A2|G|1225
6OLG|1|A2|C|1226
6OLG|1|A2|G|1227
6OLG|1|A2|C|1228
*
6OLG|1|A2|G|1248
6OLG|1|A2|G|1249
6OLG|1|A2|C|1250
6OLG|1|A2|G|1251
6OLG|1|A2|G|1252
6OLG|1|A2|A|1253
6OLG|1|A2|G|1254
6OLG|1|A2|C|1255
6OLG|1|A2|G|1256
6OLG|1|A2|A|1257
6OLG|1|A2|G|1258
6OLG|1|A2|C|1259

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AF

60S ribosomal protein L7