J4_6OLG_008

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

6OLG|1|A2|A|4196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OLG_008 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.1669

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|A2|C|4193
6OLG|1|A2|U|4194
6OLG|1|A2|A|4195
6OLG|1|A2|A|4196
6OLG|1|A2|G|4197
*
6OLG|1|A2|U|4251
6OLG|1|A2|U|4252
6OLG|1|A2|G|4253
6OLG|1|A2|A|4254
6OLG|1|A2|U|4255
*
6OLG|1|A2|A|4279
6OLG|1|A2|C|4280
6OLG|1|A2|C|4281
*
6OLG|1|A2|G|4290
6OLG|1|A2|G|4291
6OLG|1|A2|G|4292

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29

Chain Ao

60S ribosomal protein L36a