J4_6OLI_008

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6OLI|1|t|A|2675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLI|1|t|G|2597
6OLI|1|t|G|2598
*
6OLI|1|t|U|2616
6OLI|1|t|G|2617
6OLI|1|t|U|2618
6OLI|1|t|G|2619
6OLI|1|t|A|2620
6OLI|1|t|A|2621
*
6OLI|1|t|U|2671
6OLI|1|t|G|2672
6OLI|1|t|G|2673
6OLI|1|t|A|2674
6OLI|1|t|A|2675
6OLI|1|t|A|2676
6OLI|1|t|G|2677
*
6OLI|1|t|U|2697
6OLI|1|t|C|2698

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain V

60S ribosomal protein L22

Chain h

60S ribosomal protein L34

Chain l

60S ribosomal protein L38