J4_6OLI_011

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAGG*CUUGAU*ACC*GGG

Length

18 nucleotides

Bulged bases

6OLI|1|t|A|4196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLI|1|t|C|4193
6OLI|1|t|U|4194
6OLI|1|t|A|4195
6OLI|1|t|A|4196
6OLI|1|t|G|4197
6OLI|1|t|G|4198
*
6OLI|1|t|C|4250
6OLI|1|t|U|4251
6OLI|1|t|U|4252
6OLI|1|t|G|4253
6OLI|1|t|A|4254
6OLI|1|t|U|4255
*
6OLI|1|t|A|4279
6OLI|1|t|C|4280
6OLI|1|t|C|4281
*
6OLI|1|t|G|4290
6OLI|1|t|G|4291
6OLI|1|t|G|4292

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L5

Chain U

60S ribosomal protein L21

Chain c

60S ribosomal protein L29

Chain p

60S ribosomal protein L36a