J4_6OLI_015
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCUUGGGAGCGGGCGUCCCCGCCC*GCAUUU*AAUGGAAUAGG*CAUGAU
- Length
- 48 nucleotides
- Bulged bases
- 6OLI|1|S2|U|689, 6OLI|1|S2|G|691, 6OLI|1|S2|G|697, 6OLI|1|S2|G|698, 6OLI|1|S2|C|730, 6OLI|1|S2|G|731, 6OLI|1|S2|U|732, 6OLI|1|S2|C|733, 6OLI|1|S2|C|738, 6OLI|1|S2|C|739, 6OLI|1|S2|G|867, 6OLI|1|S2|G|868, 6OLI|1|S2|U|871, 6OLI|1|S2|G|873, 6OLI|1|S2|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OLI|1|S2|A|685
6OLI|1|S2|U|686
6OLI|1|S2|C|687
6OLI|1|S2|U|688
6OLI|1|S2|U|689
6OLI|1|S2|G|690
6OLI|1|S2|G|691
6OLI|1|S2|G|692
6OLI|1|S2|A|693
6OLI|1|S2|G|694
6OLI|1|S2|C|695
6OLI|1|S2|G|696
6OLI|1|S2|G|697
6OLI|1|S2|G|698
6OLI|1|S2|C|730
6OLI|1|S2|G|731
6OLI|1|S2|U|732
6OLI|1|S2|C|733
6OLI|1|S2|C|734
6OLI|1|S2|C|735
6OLI|1|S2|C|736
6OLI|1|S2|G|737
6OLI|1|S2|C|738
6OLI|1|S2|C|739
6OLI|1|S2|C|746
*
6OLI|1|S2|G|796
6OLI|1|S2|C|797
6OLI|1|S2|A|798
6OLI|1|S2|U|799
6OLI|1|S2|U|800
6OLI|1|S2|U|801
*
6OLI|1|S2|A|864
6OLI|1|S2|A|865
6OLI|1|S2|U|866
6OLI|1|S2|G|867
6OLI|1|S2|G|868
6OLI|1|S2|A|869
6OLI|1|S2|A|870
6OLI|1|S2|U|871
6OLI|1|S2|A|872
6OLI|1|S2|G|873
6OLI|1|S2|G|874
*
6OLI|1|S2|C|912
6OLI|1|S2|A|913
6OLI|1|S2|U|914
6OLI|1|S2|G|915
6OLI|1|S2|A|916
6OLI|1|S2|U|917
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S
- 60S ribosomal protein L19
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: