J4_6OLZ_017

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GCCGG*CCACGCGCGCG*CGGCGGAGCGAG

Length

31 nucleotides

Bulged bases

6OLZ|1|A2|C|1220, 6OLZ|1|A2|C|1226, 6OLZ|1|A2|G|1254, 6OLZ|1|A2|C|1255, 6OLZ|1|A2|G|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLZ|1|A2|C|968
6OLZ|1|A2|U|969
6OLZ|1|A2|C|970
*
6OLZ|1|A2|G|1053
6OLZ|1|A2|C|1054
6OLZ|1|A2|C|1055
6OLZ|1|A2|G|1056
6OLZ|1|A2|G|1057
*
6OLZ|1|A2|C|1219
6OLZ|1|A2|C|1220
6OLZ|1|A2|A|1221
6OLZ|1|A2|C|1222
6OLZ|1|A2|G|1223
6OLZ|1|A2|C|1224
6OLZ|1|A2|G|1225
6OLZ|1|A2|C|1226
6OLZ|1|A2|G|1227
6OLZ|1|A2|C|1228
6OLZ|1|A2|G|1229
*
6OLZ|1|A2|C|1247
6OLZ|1|A2|G|1248
6OLZ|1|A2|G|1249
6OLZ|1|A2|C|1250
6OLZ|1|A2|G|1251
6OLZ|1|A2|G|1252
6OLZ|1|A2|A|1253
6OLZ|1|A2|G|1254
6OLZ|1|A2|C|1255
6OLZ|1|A2|G|1256
6OLZ|1|A2|A|1257
6OLZ|1|A2|G|1258

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AE

60S ribosomal protein L6

Chain AF

60S ribosomal protein L7

Chain Ab

60S ribosomal protein L29