J4_6OM6_002

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OM6_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0664

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6OM6|1|1|G|297
6OM6|1|1|G|298
6OM6|1|1|A|299
6OM6|1|1|A|300
6OM6|1|1|G|301
*
6OM6|1|1|C|316
6OM6|1|1|G|317
6OM6|1|1|C|318
6OM6|1|1|G|319
*
6OM6|1|1|C|323
6OM6|1|1|A|324
6OM6|1|1|G|325
*
6OM6|1|1|C|337
6OM6|1|1|G|338
6OM6|1|1|U|339
6OM6|1|1|A|340
6OM6|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24