J4_6OM6_005

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6OM6|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OM6_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0707

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6OM6|1|1|G|1310
6OM6|1|1|G|1311
6OM6|1|1|U|1312
6OM6|1|1|U|1313
6OM6|1|1|C|1314
*
6OM6|1|1|G|1338
6OM6|1|1|G|1339
6OM6|1|1|U|1340
6OM6|1|1|G|1341
6OM6|1|1|A|1342
6OM6|1|1|G|1343
*
6OM6|1|1|C|1404
6OM6|1|1|U|1405
*
6OM6|1|1|A|1597
6OM6|1|1|A|1598
6OM6|1|1|U|1599
6OM6|1|1|C|1600
6OM6|1|1|G|1601
6OM6|1|1|U|1602
6OM6|1|1|A|1603
6OM6|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34