3D structure

PDB id
6OM6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
6OM6|1|1|U|1971
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OM6_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0933
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_42306.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
5

Unit IDs

6OM6|1|1|C|1833
6OM6|1|1|U|1834
6OM6|1|1|2MG|1835
*
6OM6|1|1|C|1905
6OM6|1|1|G|1906
*
6OM6|1|1|C|1924
6OM6|1|1|C|1925
6OM6|1|1|U|1926
6OM6|1|1|A|1927
6OM6|1|1|A|1928
6OM6|1|1|G|1929
6OM6|1|1|G|1930
6OM6|1|1|U|1931
6OM6|1|1|A|1932
6OM6|1|1|G|1933
*
6OM6|1|1|C|1967
6OM6|1|1|G|1968
6OM6|1|1|A|1969
6OM6|1|1|A|1970
6OM6|1|1|U|1971
6OM6|1|1|G|1972

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain 5
Transfer RNA; tRNA
Chain B
50S ribosomal protein L2

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