J4_6OM6_015
3D structure
- PDB id
- 6OM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAG*CAC*GGGGUCG*UU
- Length
- 16 nucleotides
- Bulged bases
- 6OM6|1|5|U|8, 6OM6|1|5|A|9, 6OM6|1|5|U|47, 6OM6|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OM6_015 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.475
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6OM6|1|5|A|7
6OM6|1|5|U|8
6OM6|1|5|A|9
6OM6|1|5|G|10
*
6OM6|1|5|C|25
6OM6|1|5|A|26
6OM6|1|5|C|27
*
6OM6|1|5|G|43
6OM6|1|5|G|44
6OM6|1|5|G|45
6OM6|1|5|G|46
6OM6|1|5|U|47
6OM6|1|5|C|48
6OM6|1|5|G|49
*
6OM6|1|5|U|65
6OM6|1|5|U|66
Current chains
- Chain 5
- tRNA(gly)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
- Chain r
- 30S ribosomal protein S13
Coloring options: